Publications

Agency and Autonomy

Ågren, A. J. (2021). Why the selfish genes metaphor remains a powerful thinking tool | Aeon Essays. Aeon.

Barandiaran, X., E. Di Paolo, and M. Rohde. (2009). “Defining agency. Individuality, normativity, asymmetry and spatio-temporality in action.” Adaptive Behavior17(5):367–386.

Beckner, M. (1968).The Biological Way of Thought. Berkeley and Los Angeles: The University of California Press.

Bich, L., & Bechtel, W. (2022). Control mechanisms: Explaining the integration and versatility of biological organisms. Adaptive Behavior, 105971232210744.

Bich, L., & Bechtel, W. (2022). Organization needs organization: Understanding integrated control in living organisms. Studies in History and Philosophy of Science, 93, 96–106.

Black, A.J., Bourrat, P. and Rainey, P.B. (2020). “Ecological scaffolding and the evolution of individuality.” Nature Ecology & Evolution 4:426–436.

Buss, L. (1987). The Evolution of Individuality. Princeton: Princeton University Press.

Callebaut, W. G.B. Mueller, and S.A. Newman. (2007). “The organismic systems approach. Streamlining the naturalistic agenda.” In Integrating Evolution and Development: From Theory to Practice. Edited by R. Sansom and R.N. Brandon. Cambridge (UK): Cambridge University Press, 25–92.

Camazine, S., J.-L. Deneubourg, N. R. Franks, J. Sneyd, G. Theraulaz and E. Bonabeau. (2001). Self-Organization in Biological Systems. Princeton: Princeton University Press.

Dawkins, R. (1976).The Selfish Gene.Oxford: Oxford University Press.

Dawkins, R. (1982).The Extended Phenotype: The Gene as the Unit of Selection.Oxford: Oxford University Press.

Deacon, T. and Cashman, T. (2013). “Teleology versus mechanism in biology: beyond self-organization.” In Beyond Mechanism: New Frontiers in Biology and Evolutionary Theory. Edited by B. Henning and A. Scarfe. Lanham (MD): Lexington Books.

Depew, D.J. and B.H. Weber. (1995). Darwinism Evolving: Systems Dynamics and the Genealogy of Natural Selection. Cambridge (MA): MIT Press.

Desmond, H., & Huneman, P. (2022). The integrated information theory of agency. Brain and Behavioral Sciences, 45, 22–24.

Di Paulo, E.A. (2005). “Autopoiesis, adaptivity, teleology, agency.” Phenomenology and the Cognitive Sciences 4:429–452.

Driesch, H. (1908). The Science and Philosophy of Organism, Volume 1. London: Adam and Charles Black.

Fortune, G. T., Oliveira, N. M., & Goldstein, R. E. (2021). Biofilm Growth Under Elastic Confinement [Preprint]. Biophysics.

Fulda, F.C. (2017). “Natural agency: the case of bacterial cognition.”Journal of the American Philosophical Association 3:69–90

Gambarotto, A., & Mossio, M. (2022). Enactivism and the Hegelian Stance on Intrinsic Purposiveness. Phenomenology and the Cognitive Sciences.

Ganti, T. (2003). The Principles of Life. Oxford: Oxford University Press.

Godfrey-Smith, P. (2012). “Darwinian individuals.” In From Groups to Individuals: New Perspectives on Biological Associations and Emerging Individuality.” Edited by F. Bouchard and P. Huneman. Cambridge (MA): The MIT Press.

Hill, J., Oderberg, D. S., Gibbins, J. M., & Bojak, I. (2022). Mistake-Making: A Theoretical Framework for Generating Research Questions in Biology, With Illustrative Application to Blood Clotting. THE QUARTERLY REVIEW OF BIOLOGY, 97, 13.

Kauffman, S. (2003). “Molecular autonomous agents.” Philosophical Transactions of the Royal Society of London, Part A 361:1089–1099.

Kauffman, S., Logan, R.K., Este, R., Goebel, R., Hobill, D. and Shmulevich, I. (2008). “Propagating organization: an enquiry.” Biology & Philosophy 23:27–45.

Laland, K.N., J. Odling-Smee, and S.F. Gilbert. (2008). “EvoDevo and Niche Construction: Building Bridges.” Journal of Experimental Zoology 310B:549–566.