Publications

Causation in Development and Evolution

Brun‐Usan, M., Zimm, R., & Uller, T. (2022). Beyond genotype‐phenotype maps: Toward a phenotype‐centered perspective on evolution. BioEssays, 2100225.

Chiu, L. (2019). “Decoupling, co-mingling and the evolutionary significance of experiential niche construction.” In Evolutionary Causation: Biological and Philosophical Reflections. Edited by T. Uller and K. Laland. Cambridge (MA): The MIT Press. https://doi.org/10.7551/mitpress/11693.003.0015.

Clark, J. W., Hetherington, A. J., Morris, J. L., Pressel, S., Duckett, J. G., Puttick, M. N., Schneider, H., Kenrick, P., Wellman, C. H., & Donoghue, P. C. J. (2023). Evolution of phenotypic disparity in the plant kingdom. Nature Plants.

Cornwallis, C. K., Svensson-Coelho, M., Lindh, M., Li, Q., Stábile, F., Hansson, L.-A., & Rengefors, K. (2023). Single-cell adaptations shape evolutionary transitions to multicellularity in green algae. Nature Ecology & Evolution.

Cornwallis, C. K., Van ’T Padje, A., Ellers, J., Klein, M., Jackson, R., Kiers, E. T., West, S. A., & Henry, L. M. (2023). Symbioses shape feeding niches and diversification across insects. Nature Ecology & Evolution.

Davín, A. A., Schrempf, D., Williams, T. A., Hugenholtz, P., & Szöllősi, G. J. (2022). Relative Time Inference Using Lateral Gene Transfers. In H. Luo (Ed.), Environmental Microbial Evolution (Vol. 2569, pp. 75–94). Springer US. https://doi.org/10.1007/978-1-0716-2691-7_4

Dawkins, R. (1976).The Selfish Gene.Oxford: Oxford University Press.

Dawkins, R. (1982).The Extended Phenotype: The Gene as the Unit of Selection.Oxford: Oxford University Press.

DiFrisco, J. (n.d.). Body Plan Identity: A Mechanistic Model. Evolutionary Biology, 1

DiFrisco, J. and J. Jaeger. (2019). “Beyond networks: mechanism and process in evo-devo.” Biology and Philosophy 34:54. https://doi.org/10.1007/s10539-019-9716-9.

DiFrisco, J. and J. Jaeger. (2020). Genetic causation in complex regulatory systems: an integrative dynamical perspective.” Bioessays 42:6.https://doi.org/10.1002/bies.201900226.

DiFrisco, J., A.C. Love, and G.P. Wagner. (2020). “Character-identity mechanisms: A conceptual model for comparative-mechanistic biology.” Biology & Philosophy 35:44.

DiFrisco, J., Love, A. C., & Wagner, G. P. (2022). The hierarchical basis of serial homology and evolutionary novelty. Journal of Morphology, jmor.21531.

DiFrisco, J., Wagner, G. P., & Love, A. C. (2022). Reframing research on evolutionary novelty and co-option: Character identity mechanisms versus deep homology. Seminars in Cell & Developmental Biology, S1084952122001033.

Doulcier, G., & Lambert, A. (2023). Neutral Diversity in Experimental Metapopulations (arXiv:2307.06393). arXiv.

Du Crest, A., Valković, M., Ariew, A., Desmond, H., Huneman, P., & Reydon, T. A. C. (Eds.). (2023). Evolutionary Thinking Across Disciplines: Problems and Perspectives in Generalized Darwinism (Vol. 478). Springer International Publishing.

Duckworth, R. A., Chenard, K. C., Meza, L., & Beiriz, M. C. (2023). Coping styles vary with species’ sociality and life history: A systematic review and meta-regression analysis. Neuroscience & Biobehavioral Reviews, 151, 105241.

Erickson, J.R. and K. Echeverri (2018). "Learning from regeneration research organisms: The circuitous road to scar free wound healing." Developmental Biology 433(2):144–154.

Feiner, N., Radersma, R., Vasquez, L., Ringnér, M., Nystedt, B., Raine, A., Tobi, E. W., Heijmans, B. T., & Uller, T. (2022). Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species. IScience, 25(5), 104303.

Forti, L. R., Szabo, J. K., & Japyassú, H. F. (2023). Host manipulation by parasites through the lens of Niche Construction Theory. Behavioural Processes, 210, 104907.

Fung, L., Konkol, A., Ishikawa, T., Larson, B. T., Brunet, T., & Goldstein, R. E. (2023). Swimming, Feeding and Inversion of Multicellular Choanoflagellate Sheets. Physical Review Letters, 131(16), 168401. 

Gilbert, S.F. and D. Epel (2009). Ecological Developmental Biology: Integrating Epigenetics, Medicine, and Evolution. Sunderland: Sinauer.

Glimm, T., Kaźmierczak, B., Newman, S. A., & Bhat, R. (2023). A two-galectin network establishes mesenchymal condensation phenotype in limb development. Mathematical Biosciences, 365, 109054.

Godfrey-Smith, P. (2001). “Three kinds of adaptationism.” In Adaptationism and Optimality. Edited by S.H. Orzack and E. Sober. New York: Cambridge University Press, 335–357.

Godfrey-Smith, P. (2009). Darwinian Populations and Natural Selection. Oxford: Oxford University Press.